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Evolution of Machine Learning Algorithms in the Prediction and Design of Anticancer Peptides

Author(s):

Shaherin Basith Mail, Balachandran Manavalan, Tae Hwan Shin, DaeYeon Lee and Gwang Lee*   Pages 1 - 9 ( 9 )

Abstract:


Peptides act as promising anticancer agents due to their ease of synthesis and modifications, enhanced tumor penetration, and less systemic toxicity. However, only limited success has been achieved so far, as experimental design and synthesis of anticancer peptides (ACPs) are prohibitively costly and time-consuming. Furthermore, sequential increase in the protein sequence data via high-throughput sequencing makes it difficult to identify ACPs only through experimentation, that often involves months or years of speculation and failure. All these limitations could be conquered by applying machine learning (ML) approaches, which is a field of artificial intelligence that automates analytical model building for rapid and accurate outcome predictions. Recently, ML approaches hold great promise in the rapid discovery of ACPs, which could be witnessed by the growing number of ML-based anticancer prediction tools. In this review, we aim to provide a comprehensive view on the existing ML approaches for ACP predictions. Initially, we will briefly discuss the currently available ACP databases. This is followed by the main text, where state-of-the-art ML approaches working principles and their performances based on the ML algorithms are reviewed. Lastly, we discuss on the limitations and future directions of the ML methods in the prediction of ACPs.

Keywords:

Cancer, anticancer peptides, machine learning, support vector machine, random forest

Affiliation:

Ajou University School of Medicine Suwon, Ajou University School of Medicine Department of Physiology, Ajou University School of Medicine Suwon, Ajou University School of Medicine Suwon, Ajou University School of Medicine Suwon



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